STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54413.1Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (297 aa)    
Predicted Functional Partners:
AFY57192.1
DNA-binding domain-containing protein, AraC-type.
  
     0.751
AFY58512.1
DNA-binding domain-containing protein, AraC-type.
  
     0.724
AFY54414.1
DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain.
 
    
0.679
AFY58537.1
DNA-binding domain-containing protein, AraC-type.
  
     0.648
AFY58528.1
DNA-binding domain-containing protein, AraC-type.
  
     0.477
AFY54415.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
       0.464
AFY54412.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
       0.456
AFY54416.1
Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase.
       0.405
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.