STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54505.1Putative protease of the Abi (CAAX) family; PFAM: CAAX amino terminal protease family. (833 aa)    
Predicted Functional Partners:
AFY56832.1
Hypothetical protein.
      0.864
AFY56510.1
Hypothetical protein.
  
     0.709
AFY57657.1
Multisubunit sodium/proton antiporter, MrpG subunit; PFAM: Na+/H+ antiporter subunit; TC 2.A.63.1.
  
     0.529
AFY55520.1
Hypothetical protein.
  
     0.519
AFY54626.1
Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.495
AFY56767.1
ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.487
AFY54711.1
Putative membrane protein; PFAM: DoxX.
  
     0.479
AFY57771.1
Hypothetical protein.
  
     0.479
AFY53754.1
Hypothetical protein.
  
     0.470
AFY59058.1
Muramidase (phage lambda lysozyme); PFAM: Phage lysozyme.
  
     0.464
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.