STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54549.1Hypothetical protein. (358 aa)    
Predicted Functional Partners:
AFY54548.1
Hypothetical protein.
       0.753
AFY55060.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.737
AFY58511.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.737
AFY58513.1
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Localisation of periplasmic protein complexes.
  
 
 0.587
AFY58529.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes; TIGRFAM: TonB-dependent siderophore receptor.
  
 
 0.587
AFY58536.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes.
  
 
 0.587
AFY58716.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
 
 0.587
AFY58717.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes.
  
 
 0.587
AFY55059.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
 
 0.545
AFY57226.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
 
 0.545
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.