STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54582.1Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein. (478 aa)    
Predicted Functional Partners:
AFY54585.1
PFAM: O-Antigen ligase.
 
    0.858
AFY54581.1
PFAM: Glycosyl transferase family 2.
 
    0.845
AFY54580.1
Putative N-acetylglucosaminyltransferase; PFAM: Core-2/I-Branching enzyme.
 
    0.819
AFY54589.1
Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.745
AFY57168.1
Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.704
AFY54584.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
    0.634
AFY55073.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.
  
  
 0.628
AFY58423.1
dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.628
AFY54588.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
    0.603
AFY53781.1
Hypothetical protein.
  
     0.576
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.