STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54585.1PFAM: O-Antigen ligase. (446 aa)    
Predicted Functional Partners:
AFY54582.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
    0.858
AFY54580.1
Putative N-acetylglucosaminyltransferase; PFAM: Core-2/I-Branching enzyme.
 
    0.840
AFY54584.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
    0.796
AFY54589.1
Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.778
AFY54581.1
PFAM: Glycosyl transferase family 2.
 
    0.777
AFY53781.1
Hypothetical protein.
  
     0.773
AFY56042.1
Conserved repeat protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.773
AFY53782.1
Putative S-layer protein; PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; Belongs to the OprB family.
  
     0.759
AFY55648.1
DGQHR domain-containing protein; TIGRFAM: DGQHR domain.
  
     0.746
AFY58141.1
Putative N-acetylglucosaminyltransferase; PFAM: Core-2/I-Branching enzyme.
  
    0.746
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.