STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY55561.1ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease. (421 aa)    
Predicted Functional Partners:
macB
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   0.992
AFY53596.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
   0.983
macB-2
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
   0.983
macB-3
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
   0.983
AFY53903.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
   0.939
AFY56002.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
   0.938
AFY58812.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
   0.938
AFY56403.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
   0.935
AFY53584.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
 
   0.929
AFY55513.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
 
   0.929
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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