Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY55374.1 | AFY55785.1 | Riv7116_2877 | Riv7116_3322 | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.872 |
| AFY55374.1 | rpoA | Riv7116_2877 | Riv7116_2660 | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.952 |
| AFY55374.1 | rpoB | Riv7116_2877 | Riv7116_0719 | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.954 |
| AFY55374.1 | rpoZ | Riv7116_2877 | Riv7116_1982 | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.952 |
| AFY55785.1 | AFY55374.1 | Riv7116_3322 | Riv7116_2877 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | 0.872 |
| AFY55785.1 | AFY57818.1 | Riv7116_3322 | Riv7116_5442 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | 0.582 |
| AFY55785.1 | dnaG | Riv7116_3322 | Riv7116_0784 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.856 |
| AFY55785.1 | prfA | Riv7116_3322 | Riv7116_2666 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.577 |
| AFY55785.1 | rplS | Riv7116_3322 | Riv7116_0833 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.579 |
| AFY55785.1 | rpoA | Riv7116_3322 | Riv7116_2660 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.819 |
| AFY55785.1 | rpoB | Riv7116_3322 | Riv7116_0719 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.821 |
| AFY55785.1 | rpoZ | Riv7116_3322 | Riv7116_1982 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.716 |
| AFY55785.1 | secA | Riv7116_3322 | Riv7116_4330 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.647 |
| AFY55785.1 | trmD | Riv7116_3322 | Riv7116_0806 | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.670 |
| AFY57818.1 | AFY55785.1 | Riv7116_5442 | Riv7116_3322 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | RNA polymerase sigma factor, cyanobacterial RpoD-like family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.582 |
| AFY57818.1 | prfA | Riv7116_5442 | Riv7116_2666 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.894 |
| AFY57818.1 | rplS | Riv7116_5442 | Riv7116_0833 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.977 |
| AFY57818.1 | rpoA | Riv7116_5442 | Riv7116_2660 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.482 |
| AFY57818.1 | secA | Riv7116_5442 | Riv7116_4330 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.514 |
| AFY57818.1 | trmD | Riv7116_5442 | Riv7116_0806 | GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.559 |
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