STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY55871.1Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily. (238 aa)    
Predicted Functional Partners:
AFY55870.1
TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B.
 
 
 0.985
AFY55875.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm5; CRISPR-associated RAMP protein, SSO1426 family.
 
     0.870
AFY55877.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
     0.862
AFY55872.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csx10 family.
       0.789
AFY55873.1
Hypothetical protein.
       0.778
AFY55881.1
CRISPR-associated protein, Cas6 family; PFAM: Sigma-70, region 4; Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6.
 
   
 0.748
AFY55874.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family.
 
    
0.743
AFY57361.1
PFAM: CRISPR-associated protein.
  
 
 0.735
AFY58817.1
Type II secretory pathway, component ExeA (predicted ATPase); PFAM: ATPase family associated with various cellular activities (AAA); Electron transfer DM13.
 
     0.710
AFY55128.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
  
     0.646
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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