STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56012.1PFAM: PBS lyase HEAT-like repeat. (206 aa)    
Predicted Functional Partners:
AFY56011.1
PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
 
   
 0.933
AFY56018.1
PFAM: PBS lyase HEAT-like repeat.
  
  
0.920
AFY56010.1
ADP-glucose pyrophosphorylase; PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
 
   
 0.884
AFY56009.1
PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
 
   
 0.852
AFY56013.1
PFAM: PBS lyase HEAT-like repeat.
 
   
 0.845
AFY56017.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit.
  
   
 0.819
cpcT-2
CpeT/CpcT family (DUF1001); Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.816
AFY56016.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
  
   
 0.806
AFY56020.1
PFAM: Phycobilisome protein.
  
   
 0.806
AFY56021.1
PFAM: Phycobilisome protein.
  
   
 0.805
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.