STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56344.1PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; TC 1.A.11. (530 aa)    
Predicted Functional Partners:
AFY56318.1
PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.998
AFY55703.1
Hypothetical protein.
  
 
 0.923
AFY57488.1
PFAM: Protein of unknown function (DUF3240).
  
 
 0.923
AFY53642.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
 
  
 0.905
AFY53997.1
PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
    
 0.895
AFY58122.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
      0.888
AFY53330.1
EAL domain-containing protein; PFAM: EAL domain; Response regulator receiver domain.
      0.832
AFY58193.1
PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
      0.809
AFY57774.1
EAL domain-containing protein; PFAM: EAL domain; Response regulator receiver domain.
      0.753
AFY55304.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
      0.718
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.