STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56430.1Putative NTPase (NACHT family); PFAM: PBS lyase HEAT-like repeat; NACHT domain. (1281 aa)    
Predicted Functional Partners:
AFY52888.1
Hypothetical protein.
  
     0.713
AFY55388.1
WD40 repeat-containing protein; PFAM: Pentapeptide repeats (8 copies); WD domain, G-beta repeat; NACHT domain.
 
    0.703
AFY57842.1
WD40 repeat-containing protein; PFAM: Pentapeptide repeats (8 copies); WD domain, G-beta repeat; NACHT domain.
 
    0.699
AFY56560.1
PFAM: Polysaccharide pyruvyl transferase.
  
     0.689
AFY55738.1
Hypothetical protein; PFAM: Polysaccharide pyruvyl transferase.
  
     0.649
AFY56024.1
PFAM: PBS lyase HEAT-like repeat.
  
     0.619
AFY54099.1
PFAM: Uncharacterized conserved protein (DUF2278).
  
     0.617
AFY54442.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.611
AFY57335.1
Putative NTPase (NACHT family); PFAM: NACHT domain.
 
    0.611
AFY52915.1
PBS lyase HEAT-like repeat protein.
  
     0.579
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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