STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56461.1Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin. (292 aa)    
Predicted Functional Partners:
AFY55341.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin.
  
  
 
0.928
AFY56542.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin; Tetratricopeptide repeat; Belongs to the peptidase S1B family.
    
  0.902
AFY56462.1
PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
       0.732
AFY56460.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: PDZ domain (Also known as DHR or GLGF).
 
    
0.646
rsfS
Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
 
   0.510
AFY55902.1
PFAM: Ribulose bisphosphate carboxylase, small chain; ATPase family associated with various cellular activities (AAA).
    
 0.508
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.452
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.