STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56681.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
AFY56682.1
Uncharacterized protein; PFAM: von Willebrand factor type A domain.
 
    0.941
AFY56680.1
PFAM: Protein kinase domain; Tetratricopeptide repeat.
 
   
 0.911
AFY53254.1
PFAM: Protein of unknown function (DUF3352).
  
     0.684
AFY53518.1
Hypothetical protein.
  
    0.671
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.627
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
    
  0.596
AFY58039.1
PFAM: Protein of unknown function (DUF3352).
  
     0.530
AFY54929.1
Putative low-complexity protein; PFAM: Pentapeptide repeats (8 copies); RDD family.
  
   
 0.526
AFY53706.1
Hypothetical protein.
  
 
   0.513
AFY54911.1
DGQHR domain-containing protein; TIGRFAM: DGQHR domain.
  
     0.507
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.