STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56733.1PFAM: Bacterial pre-peptidase C-terminal domain. (156 aa)    
Predicted Functional Partners:
AFY53003.1
Subtilisin-like serine protease; PFAM: Subtilase family.
  
     0.775
AFY55261.1
Hypothetical protein.
  
     0.772
AFY52936.1
PFAM: von Willebrand factor type A domain.
  
    0.771
AFY52937.1
PFAM: von Willebrand factor type A domain.
  
    0.770
AFY52938.1
PFAM: von Willebrand factor type A domain.
  
    0.770
AFY55302.1
Hypothetical protein.
  
    0.769
AFY55895.1
Hypothetical protein.
  
     0.766
AFY55783.1
PFAM: Glutathione S-transferase, N-terminal domain.
  
    0.754
AFY56554.1
ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.749
AFY54026.1
Hypothetical protein.
  
     0.746
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.