STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY56893.1PFAM: Amino acid permease. (453 aa)    
Predicted Functional Partners:
AFY56894.1
Putative methyltransferase.
 
     0.901
AFY58128.1
Methylase involved in ubiquinone/menaquinone biosynthesis.
  
     0.767
AFY53850.1
Glycosidase; PFAM: Alpha amylase, catalytic domain.
    
 0.475
AFY54611.1
Trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase-fused probable maltokinase; trehalose synthase.
    
 0.475
AFY55563.1
Glycosidase; PFAM: Alpha amylase, catalytic domain.
    
 0.475
AFY56102.1
Glycosidase; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain.
    
 0.475
AFY57116.1
Glycosidase; PFAM: Starch binding domain; Alpha amylase, catalytic domain.
    
 0.475
AFY57919.1
Glycosidase; PFAM: Alpha amylase, catalytic domain.
    
 0.475
AFY56892.1
Putative permease; PFAM: Domain of unknown function DUF20.
       0.433
AFY56895.1
PFAM: Bacterial regulatory proteins, tetR family.
       0.407
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
Server load: low (18%) [HD]