STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57168.1Uncharacterized protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain. (672 aa)    
Predicted Functional Partners:
AFY54993.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
 
 0.911
AFY53346.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
 
 0.877
AFY53071.1
Hypothetical protein.
  
 
 0.859
AFY57167.1
Hypothetical protein; PFAM: Glycosyltransferase family 28 C-terminal domain.
 
     0.816
AFY57174.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.731
AFY54582.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.704
AFY54688.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.676
AFY54585.1
PFAM: O-Antigen ligase.
 
  
 0.671
AFY52864.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.669
AFY57166.1
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PFAM: Oligosaccharide biosynthesis protein Alg14 like.
 
     0.663
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.