STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57299.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
AFY57300.1
Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain.
       0.773
AFY57295.1
Hypothetical protein.
       0.697
AFY57296.1
Hypothetical protein.
       0.697
AFY57297.1
Hypothetical protein.
       0.697
AFY57298.1
Hypothetical protein.
       0.697
AFY57294.1
Hypothetical protein.
       0.645
AFY57293.1
Hypothetical protein.
       0.612
AFY57301.1
Hypothetical protein.
       0.590
AFY57302.1
Hypothetical protein.
       0.590
AFY57291.1
Hypothetical protein.
       0.574
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.