STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57362.1PFAM: CRISPR-associated protein (Cas_Cmr3). (380 aa)    
Predicted Functional Partners:
AFY57361.1
PFAM: CRISPR-associated protein.
   
 
 0.980
AFY55870.1
TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B.
   
 
 0.917
AFY57363.1
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4.
     
 0.674
AFY57364.1
Hypothetical protein.
       0.571
AFY57365.1
Hypothetical protein.
     
 0.528
AFY57360.1
Hypothetical protein.
       0.444
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.