STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57586.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
AFY57590.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
 
   0.966
AFY57587.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
 
 
   0.964
AFY57591.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
 
 0.955
AFY57580.1
PFAM: Phage tail sheath protein.
 
 
 0.950
AFY57579.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
   0.933
AFY57585.1
Hypothetical protein.
 
     0.902
AFY57588.1
Hypothetical protein; PFAM: Phage-related baseplate assembly protein.
 
    0.885
AFY53273.1
Type II secretory pathway, component HofQ; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein.
   
 
 0.869
AFY54252.1
PFAM: Phage tail sheath protein.
 
 
 0.853
AFY54251.1
PFAM: Phage tail sheath protein.
 
 
 0.846
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.