STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57669.1Penicillin-binding protein, beta-lactamase class C; PFAM: Hemolysin-type calcium-binding repeat (2 copies); Beta-lactamase. (639 aa)    
Predicted Functional Partners:
AFY56422.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.580
AFY57974.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.571
AFY57670.1
Hypothetical protein.
       0.497
AFY52991.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family.
 
  
 0.476
AFY57678.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein.
 
  
 0.471
AFY59073.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Thioesterase domain; Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.469
AFY57428.1
Hypothetical protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.433
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.