STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY57917.1PFAM: Tetratricopeptide repeat. (315 aa)    
Predicted Functional Partners:
AFY58780.1
Cytochrome c biogenesis factor; PFAM: Tetratricopeptide repeat.
  
     0.771
AFY53593.1
Tetratricopeptide repeat protein.
 
     0.766
AFY52976.1
Tfp pilus assembly protein PilF; PFAM: Glycosyl transferase family 2; Tetratricopeptide repeat.
 
     0.757
AFY57392.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.
   
 0.693
AFY56657.1
PFAM: Tetratricopeptide repeat.
  
     0.589
AFY52977.1
Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (three repeats); Glycosyl transferase family 2; Tetratricopeptide repeat.
 
 
   0.588
petJ-2
Cytochrome c, mono- and diheme variants family; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
       0.552
AFY57766.1
PFAM: Tetratricopeptide repeat.
  
     0.496
AFY57918.1
Hypothetical protein.
       0.479
AFY52780.1
PFAM: Tetratricopeptide repeat.
  
     0.402
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.