STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY58043.1Capsular exopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family. (717 aa)    
Predicted Functional Partners:
AFY54993.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
 
 0.927
AFY53346.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
 
 0.894
AFY53071.1
Hypothetical protein.
 
 
 0.876
AFY58044.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
 
  
 0.754
AFY56669.1
Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.
 
  
 0.675
AFY52854.1
Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.
 
  
 0.670
AFY54688.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.666
AFY55618.1
Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.
 
  
 0.663
AFY52864.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.661
AFY55192.1
Anti-anti-sigma factor; PFAM: Bacterial sugar transferase; STAS domain; TIGRFAM: anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
  
 0.659
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.