STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY58111.1PFAM: Mechanosensitive ion channel. (302 aa)    
Predicted Functional Partners:
AFY52703.1
PFAM: Mechanosensitive ion channel.
  
     0.610
AFY52702.1
PFAM: Mechanosensitive ion channel.
  
     0.561
AFY53450.1
Putative membrane protein; PFAM: Domain of unknown function (DUF389); TIGRFAM: uncharacterized hydrophobic domain.
  
     0.524
AFY55252.1
Trk-type K+ transport system, membrane component; PFAM: Cation transport protein.
  
  
 0.452
AFY55711.1
PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family.
 
    0.431
AFY53479.1
TIGR00341 family protein; PFAM: Domain of unknown function (DUF389); TIGRFAM: uncharacterized hydrophobic domain; TIGR00341 family protein.
  
     0.405
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.