STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY58248.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (255 aa)    
Predicted Functional Partners:
AFY53595.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
   0.929
AFY55561.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
   0.929
AFY55823.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
   0.929
AFY58007.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
   0.929
AFY54662.1
ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter.
 
    
0.904
AFY58486.1
ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter.
 
    
0.903
AFY58249.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
   0.877
AFY55512.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.817
AFY56293.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
    0.751
AFY54562.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
    0.736
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.