AFY58334.1 protein (Rivularia sp. PCC7116) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY58334.1

PFAM: Chlorophyll A-B binding protein. (58 aa)

Predicted Functional Partners:

AFY52893.1

0.753

AFY56968.1

0.741

AFY53946.1

0.735

AFY58968.1

0.732

AFY54816.1

0.728

AFY55590.1

0.726

AFY53655.1

0.720

AFY53020.1

0.719

AFY56448.1

0.716

AFY53322.1

0.712

Your Current Organism:

Rivularia sp. PCC7116

NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY52893.1	AFY53020.1	Riv7116_0289	Riv7116_0417	PFAM: Domain of unknown function (DUF1825).	Hypothetical protein.	0.756
AFY52893.1	AFY53655.1	Riv7116_0289	Riv7116_1081	PFAM: Domain of unknown function (DUF1825).	PFAM: Protein of unknown function (DUF2839).	0.773
AFY52893.1	AFY54816.1	Riv7116_0289	Riv7116_2298	PFAM: Domain of unknown function (DUF1825).	Hypothetical protein.	0.649
AFY52893.1	AFY55590.1	Riv7116_0289	Riv7116_3115	PFAM: Domain of unknown function (DUF1825).	Hypothetical protein.	0.771
AFY52893.1	AFY56448.1	Riv7116_0289	Riv7116_4008	PFAM: Domain of unknown function (DUF1825).	PFAM: Protein of unknown function (DUF3288).	0.770
AFY52893.1	AFY56968.1	Riv7116_0289	Riv7116_4548	PFAM: Domain of unknown function (DUF1825).	Hypothetical protein.	0.772
AFY52893.1	AFY58334.1	Riv7116_0289	Riv7116_5973	PFAM: Domain of unknown function (DUF1825).	PFAM: Chlorophyll A-B binding protein.	0.753
AFY52893.1	AFY58968.1	Riv7116_0289	Riv7116_6645	PFAM: Domain of unknown function (DUF1825).	PFAM: Protein of function (DUF2518).	0.742
AFY53020.1	AFY52893.1	Riv7116_0417	Riv7116_0289	Hypothetical protein.	PFAM: Domain of unknown function (DUF1825).	0.756
AFY53020.1	AFY53655.1	Riv7116_0417	Riv7116_1081	Hypothetical protein.	PFAM: Protein of unknown function (DUF2839).	0.773
AFY53020.1	AFY54816.1	Riv7116_0417	Riv7116_2298	Hypothetical protein.	Hypothetical protein.	0.767
AFY53020.1	AFY55590.1	Riv7116_0417	Riv7116_3115	Hypothetical protein.	Hypothetical protein.	0.648
AFY53020.1	AFY56448.1	Riv7116_0417	Riv7116_4008	Hypothetical protein.	PFAM: Protein of unknown function (DUF3288).	0.773
AFY53020.1	AFY58334.1	Riv7116_0417	Riv7116_5973	Hypothetical protein.	PFAM: Chlorophyll A-B binding protein.	0.719
AFY53020.1	AFY58968.1	Riv7116_0417	Riv7116_6645	Hypothetical protein.	PFAM: Protein of function (DUF2518).	0.767
AFY53322.1	AFY58334.1	Riv7116_0735	Riv7116_5973	Hypothetical protein.	PFAM: Chlorophyll A-B binding protein.	0.712
AFY53655.1	AFY52893.1	Riv7116_1081	Riv7116_0289	PFAM: Protein of unknown function (DUF2839).	PFAM: Domain of unknown function (DUF1825).	0.773
AFY53655.1	AFY53020.1	Riv7116_1081	Riv7116_0417	PFAM: Protein of unknown function (DUF2839).	Hypothetical protein.	0.773
AFY53655.1	AFY54816.1	Riv7116_1081	Riv7116_2298	PFAM: Protein of unknown function (DUF2839).	Hypothetical protein.	0.667
AFY53655.1	AFY55590.1	Riv7116_1081	Riv7116_3115	PFAM: Protein of unknown function (DUF2839).	Hypothetical protein.	0.656

page 1 of 4

Network Stats

number of nodes:

3

number of edges:

3

average node degree:

2

avg. local clustering coefficient:

1

expected number of edges:

2

PPI enrichment p-value:

0.211

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1902224

Ketone body metabolic process

5 of 7

2.46

3.83

3.55e-08

GO:0042180

Cellular ketone metabolic process

5 of 37

1.73

2.11

1.23e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016885

Ligase activity, forming carbon-carbon bonds

5 of 12

2.22

3.35

1.56e-07

GO:0016812

Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides

2 of 14

1.76

0.69

0.0464

GO:0005524

ATP binding

6 of 401

0.78

0.43

0.0464

GO:0016787

Hydrolase activity

7 of 601

0.67

0.38

0.0464

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5811

Oxoprolinase family

5 of 5

2.6

4.37

4.32e-09

CL:5791

Mixed, incl. Oxoprolinase family, and Protein YciF

6 of 17

2.15

3.91

4.32e-09

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00330

Arginine and proline metabolism

6 of 41

1.77

2.87

5.96e-08

map00480

Glutathione metabolism

3 of 60

1.3

0.72

0.0234

map01100

Metabolic pathways

10 of 1634

0.39

0.29

0.0234

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009506

Plasmodesma

6 of 7

2.54

5.38

2.42e-11

GOCC:0009536

Plastid

6 of 42

1.76

2.94

2.79e-08

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF05378

Hydantoinase/oxoprolinase N-terminal region

4 of 4

2.6

3.22

8.87e-07

PF01968

Hydantoinase/oxoprolinase

4 of 4

2.6

3.22

8.87e-07

PF02538

Hydantoinase B/oxoprolinase

3 of 3

2.6

2.33

4.68e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR045079

Oxoprolinase family

6 of 6

2.6

5.25

6.49e-11

IPR008040

Hydantoinase/oxoprolinase, N-terminal

4 of 4

2.6

3.16

1.14e-06

IPR002821

Hydantoinase A/oxoprolinase

4 of 4

2.6

3.16

1.14e-06

IPR003692

Hydantoinase B/oxoprolinase

3 of 3

2.6

2.18

9.04e-05

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About