STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY58500.1Hypothetical protein. (380 aa)    
Predicted Functional Partners:
AFY58504.1
Hypothetical protein.
 
 
 
 0.860
AFY58501.1
Thioredoxin-like protein; PFAM: NifU-like domain.
 
   
 0.778
AFY58554.1
PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease.
  
     0.775
AFY58550.1
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase.
  
     0.774
AFY58548.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; manually curated.
  
     0.773
AFY53310.1
Endoglucanase; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
   0.612
AFY58854.1
Hypothetical protein.
  
 
   0.443
AFY58502.1
Hypothetical protein.
     
 0.437
AFY58503.1
Hypothetical protein.
     
 0.437
AFY58499.1
(NiFe) hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF.
       0.434
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.