STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY58710.1PFAM: Protein of unknown function (DUF2949). (66 aa)    
Predicted Functional Partners:
AFY53173.1
Hypothetical protein.
  
     0.775
AFY56068.1
Hypothetical protein.
  
     0.775
AFY53654.1
PFAM: Domain of unknown function (DUF1815).
  
     0.774
AFY53151.1
PFAM: Protein of unknown function (DUF3038).
 
     0.773
AFY57227.1
Hypothetical protein.
  
     0.773
AFY56627.1
Hypothetical protein.
  
     0.770
AFY55194.1
PFAM: Protein of unknown function (DUF3318).
  
     0.768
AFY56014.1
PFAM: CpcD/allophycocyanin linker domain.
  
     0.767
AFY53441.1
Hypothetical protein.
  
     0.765
AFY55638.1
KaiA domain protein; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC hexamer pho [...]
  
     0.762
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.