STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY59137.1Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase. (224 aa)    
Predicted Functional Partners:
AFY59136.1
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
       0.482
AFY59006.1
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
 
  
 0.467
AFY59135.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2330).
       0.465
AFY52977.1
Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (three repeats); Glycosyl transferase family 2; Tetratricopeptide repeat.
  
  
 0.436
AFY56954.1
PFAM: Glycosyl transferase family 2.
  
    0.424
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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