Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| atpB | cyoA | BCI_0147 | BCI_0267 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | 0.914 |
| atpB | cyoB | BCI_0147 | BCI_0268 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Ubiquinol oxidase, polypeptide I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | 0.873 |
| atpB | cyoC | BCI_0147 | BCI_0269 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402. | 0.993 |
| atpB | nuoA | BCI_0147 | BCI_0381 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | NADH-quinone oxidoreductase, subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. | 0.769 |
| atpB | nuoCD | BCI_0147 | BCI_0379 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.766 |
| atpB | nuoH | BCI_0147 | BCI_0375 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | NADH-quinone oxidoreductase, chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. | 0.918 |
| atpB | nuoM | BCI_0147 | BCI_0370 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Proton-translocating NADH-quinone oxidoreductase, chain M; Identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972. | 0.918 |
| atpB | nuoN | BCI_0147 | BCI_0369 | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. | 0.783 |
| cyoA | atpB | BCI_0267 | BCI_0147 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.914 |
| cyoA | cyoB | BCI_0267 | BCI_0268 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | Ubiquinol oxidase, polypeptide I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | 0.999 |
| cyoA | cyoC | BCI_0267 | BCI_0269 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402. | 0.999 |
| cyoA | cyoE | BCI_0267 | BCI_0270 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.993 |
| cyoA | nuoA | BCI_0267 | BCI_0381 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | NADH-quinone oxidoreductase, subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. | 0.883 |
| cyoA | nuoCD | BCI_0267 | BCI_0379 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.999 |
| cyoA | nuoG | BCI_0267 | BCI_0376 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.848 |
| cyoA | nuoH | BCI_0267 | BCI_0375 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | NADH-quinone oxidoreductase, chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. | 0.968 |
| cyoA | nuoM | BCI_0267 | BCI_0370 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | Proton-translocating NADH-quinone oxidoreductase, chain M; Identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972. | 0.983 |
| cyoA | nuoN | BCI_0267 | BCI_0369 | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. | 0.921 |
| cyoB | atpB | BCI_0268 | BCI_0147 | Ubiquinol oxidase, polypeptide I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.873 |
| cyoB | cyoA | BCI_0268 | BCI_0267 | Ubiquinol oxidase, polypeptide I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433. | 0.999 |
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