STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoLDNA-directed RNA polymerase, subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family. (98 aa)    
Predicted Functional Partners:
Kcr_1522
DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.998
rpoN
DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.
  
 0.994
Kcr_1524
DNA-directed RNA polymerase, subunit H; PFAM: RNA polymerase Rpb5; KEGG: pfu:PF1565 DNA-directed RNA polymerase subunit H.
  
 0.993
Kcr_1310
DNA-directed RNA polymerase, subunit K; PFAM: RNA polymerase Rpb6; KEGG: tpe:Tpen_0290 RNA polymerase Rpb6.
  
 0.987
Kcr_1582
PFAM: RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; KEGG: pab:PAB2410 DNA-directed RNA polymerase, subunit D.
  
 0.985
Kcr_1339
DNA-directed RNA polymerase, subunit E; PFAM: RNA binding S1 domain protein; RNA polymerase Rpb7 domain protein; KEGG: mja:MJ0397 DNA-directed RNA polymerase subunit E'.
  
 0.983
Kcr_1047
DNA-directed RNA polymerase, subunit M; KEGG: pas:Pars_1789 transcription termination factor Tfs; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; SMART: DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
  
 0.974
Kcr_1523
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.971
Kcr_1593
PFAM: RNA polymerase Rpb4; KEGG: pfu:PF1036 DNA-directed RNA polymerase subunit F.
   
 
 0.912
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
    0.866
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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