STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoLDNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (98 aa)    
Predicted Functional Partners:
rpoN
DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
  
 0.999
Kcr_1310
DNA-directed RNA polymerase, subunit K; PFAM: RNA polymerase Rpb6; KEGG: tpe:Tpen_0290 RNA polymerase Rpb6
 
 0.999
Kcr_1339
DNA-directed RNA polymerase, subunit E; PFAM: RNA binding S1 domain protein; RNA polymerase Rpb7 domain protein; KEGG: mja:MJ0397 DNA-directed RNA polymerase subunit E'
  
 0.999
Kcr_1522
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
  
 0.999
Kcr_1523
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
  
 0.999
Kcr_1524
DNA-directed RNA polymerase, subunit H; PFAM: RNA polymerase Rpb5; KEGG: pfu:PF1565 DNA-directed RNA polymerase subunit H
  
 0.999
Kcr_1582
PFAM: RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; KEGG: pab:PAB2410 DNA-directed RNA polymerase, subunit D
  
 0.999
Kcr_1593
PFAM: RNA polymerase Rpb4; KEGG: pfu:PF1036 DNA-directed RNA polymerase subunit F
   
 0.999
Kcr_1047
DNA-directed RNA polymerase, subunit M; KEGG: pas:Pars_1789 transcription termination factor Tfs; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; SMART: DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family
  
 
 0.987
spt4
Transcription elongation factor Spt4; Stimulates transcription elongation
  
  
 0.958
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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