STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_0311PFAM: basic membrane lipoprotein; KEGG: pab:PAB0302 putative simple sugar transport system substrate-binding protein. (406 aa)    
Predicted Functional Partners:
Kcr_0309
PFAM: inner-membrane translocator; KEGG: pab:PAB0304 D-ribose transport system permease protein.
 
 
 0.983
Kcr_0308
PFAM: inner-membrane translocator; KEGG: pho:PH1711 simple sugar transport system permease protein.
 
 
 0.982
Kcr_0310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pho:PH1713 simple sugar transport system ATP-binding protein.
 
 0.982
Kcr_1031
ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe1405 sugar ABC transporter ATP-binding protein.
 
 0.964
Kcr_1030
ABC-type uncharacterized transport system, permease component; PFAM: inner-membrane translocator; KEGG: mta:Moth_1951 inner-membrane translocator.
 
 
 0.930
Kcr_1029
ABC-type transport system, permease component; PFAM: inner-membrane translocator; KEGG: mta:Moth_1950 inner-membrane translocator.
 
 
 0.928
Kcr_1028
ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: basic membrane lipoprotein; KEGG: smr:Smar_0131 basic membrane lipoprotein.
     
  0.900
Kcr_0312
Threonine dehydrogenase-related Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: smr:Smar_0696 alcohol dehydrogenase GroES domain protein.
       0.589
Kcr_1130
TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; thiamine biosynthesis protein; KEGG: pcl:Pcal_1723 GMP synthase, large subunit.
     
 0.589
Kcr_0306
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ape:APE_2540.1 putative ala-tRNApro hydrolase ProX.
       0.472
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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