STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_0341KEGG: smr:Smar_0103 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Kcr_0340
PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
       0.671
Kcr_0339
PFAM: NUDIX hydrolase; KEGG: tpe:Tpen_1656 NUDIX hydrolase.
       0.566
Kcr_0342
PFAM: dihydrodipicolinate synthetase; KEGG: tpe:Tpen_1666 dihydrodipicolinate synthase.
       0.491
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.