STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_0505PFAM: deoxyhypusine synthase; KEGG: mbu:Mbur_1868 deoxyhypusine synthase. (310 aa)    
Predicted Functional Partners:
eIF5A
Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
   
 0.999
Kcr_0504
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mbu:Mbur_1867 Orn/DAP/Arg decarboxylase 2.
  
 
 0.861
Kcr_0506
ABC-type oligopeptide transport system, ATPase component; KEGG: afu:AF1771 dipeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase.
       0.699
Kcr_0507
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; KEGG: afu:AF1770 dipeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase.
       0.697
Kcr_0508
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: afu:AF1769 dipeptide transport system permease protein.
       0.697
Kcr_0509
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: afu:AF1768 dipeptide transport system permease protein.
       0.692
flpA
Non-specific serine/threonine protein kinase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
  
  
 0.655
Kcr_0120
PFAM: ribosomal protein L16; KEGG: sto:ST2264 50S ribosomal protein L10e.
 
    0.637
pheS
KEGG: tko:TK0921 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.
  
  
 0.621
Kcr_1047
DNA-directed RNA polymerase, subunit M; KEGG: pas:Pars_1789 transcription termination factor Tfs; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; SMART: DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
  
 
 0.569
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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