STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_0605KEGG: deb:DehaBAV1_1212 hypothetical protein. (456 aa)    
Predicted Functional Partners:
Kcr_0604
Hypothetical protein.
       0.548
Kcr_0606
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tpe:Tpen_1762 type III restriction enzyme, res subunit.
       0.545
Kcr_0607
PFAM: protein of unknown function DUF790; KEGG: tpe:Tpen_1761 protein of unknown function DUF790.
       0.545
Kcr_0608
PFAM: TM1410 hypothetical-related protein; KEGG: gme:Gmet_1962 hypothetical protein.
       0.463
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.