STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_1081Ferredoxin; KEGG: smr:Smar_0352 ferredoxin. (77 aa)    
Predicted Functional Partners:
Kcr_1080
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: tpe:Tpen_1631 formate dehydrogenase.
     
 0.556
Kcr_1079
PFAM: Polyprenyl synthetase; KEGG: tet:TTHERM_00268030 Polyprenyl synthetase family protein Pfam: polyprenyl_synt PROSITE: POLYPRENYL_SYNTHET_2; Belongs to the FPP/GGPP synthase family.
       0.405
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.