STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_1357PFAM: Rubredoxin-type Fe(Cys)4 protein. (104 aa)    
Predicted Functional Partners:
Kcr_1356
PFAM: GTP-binding protein HSR1-related; KEGG: rci:RCIX1862 conserved GTP-binding protein (Ras family).
       0.762
Kcr_1355
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mmq:MmarC5_0197 beta-lactamase domain protein.
       0.564
hel308
DEAD/DEAH box helicase domain protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
       0.533
Kcr_1354
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mka:MK1085 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.533
Kcr_1351
Hypothetical protein.
       0.526
Kcr_1352
MCM family protein; PFAM: magnesium chelatase ChlI subunit; MCM family protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hbu:Hbut_0903 minichromosome maintenance complex; Belongs to the MCM family.
       0.526
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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