STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl37aeRibosomal L37ae protein; Binds to the 23S rRNA. (82 aa)    
Predicted Functional Partners:
Kcr_1377
PFAM: Ribosomal protein L15e; KEGG: smr:Smar_0852 ribosomal protein L15e.
  
 
 0.997
Kcr_1567
PFAM: Ribosomal protein L32e; KEGG: pho:PH1761 50S ribosomal protein L32e.
 
 
 0.997
rpl24
Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
 
 
 0.996
rps4e
Ribosomal protein S4E; PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG: smr:Smar_1031 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.
 
 
 0.996
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
 0.996
rpl18
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
 
 
 0.996
rpl15
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
 
 
 0.996
rpl21e
PFAM: Ribosomal protein L21e; KEGG: pis:Pisl_0578 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.996
rps28e
PFAM: Ribosomal protein S28e; KEGG: smr:Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 
 0.995
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
 
 
 0.995
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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