STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_1460PFAM: peptidase M20; KEGG: tko:TK2166 ArgE/DapE-related deacylase. (367 aa)    
Predicted Functional Partners:
Kcr_1459
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tko:TK1820 membrane-associated metalloprotease, M50 family, containing PDZ domain.
     
 0.784
Kcr_1458
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding-1 domain protein; KEGG: pab:PAB0558 GTP-binding protein, GTP1/obg family.
       0.773
psmB2
Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
     
 0.765
Kcr_1556
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tpe:Tpen_0316 peptidase M20.
  
     0.651
Kcr_1457
PFAM: putative RNA methylase; conserved hypothetical protein; KEGG: mth:MTH724 methyltransferase related protein.
       0.580
lysY
Acetylglutamate semialdehyde dehydrogenase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.
  
 
 0.545
argG
PFAM: argininosuccinate synthase; KEGG: hbu:Hbut_0305 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.529
Kcr_1130
TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; thiamine biosynthesis protein; KEGG: pcl:Pcal_1723 GMP synthase, large subunit.
     
 0.529
Kcr_1462
Hypothetical protein.
       0.500
Kcr_1463
Hypothetical protein.
       0.500
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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