Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APG07207.1 | APG07576.1 | BKD09_RS02590 | BKD09_RS04465 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.785 |
| APG07207.1 | APG08142.1 | BKD09_RS02590 | BKD09_RS07360 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.433 |
| APG07207.1 | APG08144.1 | BKD09_RS02590 | BKD09_RS07370 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.756 |
| APG07207.1 | APG09683.1 | BKD09_RS02590 | BKD09_RS15195 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.774 |
| APG07207.1 | APG11933.1 | BKD09_RS02590 | BKD09_RS26710 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.774 |
| APG07207.1 | APG15506.1 | BKD09_RS02590 | BKD09_RS45220 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.768 |
| APG07576.1 | APG07207.1 | BKD09_RS04465 | BKD09_RS02590 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | 0.785 |
| APG07576.1 | APG08142.1 | BKD09_RS04465 | BKD09_RS07360 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.617 |
| APG07576.1 | APG08144.1 | BKD09_RS04465 | BKD09_RS07370 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.803 |
| APG07576.1 | APG09544.1 | BKD09_RS04465 | BKD09_RS14465 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.782 |
| APG07576.1 | APG09683.1 | BKD09_RS04465 | BKD09_RS15195 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
| APG07576.1 | APG09716.1 | BKD09_RS04465 | BKD09_RS15360 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.764 |
| APG07576.1 | APG11766.1 | BKD09_RS04465 | BKD09_RS25860 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.778 |
| APG07576.1 | APG11933.1 | BKD09_RS04465 | BKD09_RS26710 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.784 |
| APG07576.1 | APG15506.1 | BKD09_RS04465 | BKD09_RS45220 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.766 |
| APG07576.1 | BKD09_RS15985 | BKD09_RS04465 | BKD09_RS15985 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADPH-dependent FMN reductase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
| APG08142.1 | APG07207.1 | BKD09_RS07360 | BKD09_RS02590 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. | 0.433 |
| APG08142.1 | APG07576.1 | BKD09_RS07360 | BKD09_RS04465 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.617 |
| APG08142.1 | APG08144.1 | BKD09_RS07360 | BKD09_RS07370 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| APG08142.1 | APG15506.1 | BKD09_RS07360 | BKD09_RS45220 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.439 |
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