Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APG07363.1 | APG07868.1 | BKD09_RS03385 | BKD09_RS05935 | Cysteine biosynthesis protein CysZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.462 |
| APG07363.1 | APG11455.1 | BKD09_RS03385 | BKD09_RS24275 | Cysteine biosynthesis protein CysZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.627 |
| APG07867.1 | APG07868.1 | BKD09_RS05930 | BKD09_RS05935 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| APG07867.1 | def | BKD09_RS05930 | BKD09_RS05940 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.436 |
| APG07868.1 | APG07363.1 | BKD09_RS05935 | BKD09_RS03385 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cysteine biosynthesis protein CysZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.462 |
| APG07868.1 | APG07867.1 | BKD09_RS05935 | BKD09_RS05930 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| APG07868.1 | APG11455.1 | BKD09_RS05935 | BKD09_RS24275 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.519 |
| APG07868.1 | def | BKD09_RS05935 | BKD09_RS05940 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.561 |
| APG07868.1 | fmt | BKD09_RS05935 | BKD09_RS05945 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.422 |
| APG07868.1 | map_2 | BKD09_RS05935 | BKD09_RS47020 | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.423 |
| APG11455.1 | APG07363.1 | BKD09_RS24275 | BKD09_RS03385 | RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cysteine biosynthesis protein CysZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.627 |
| APG11455.1 | APG07868.1 | BKD09_RS24275 | BKD09_RS05935 | RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.519 |
| def | APG07867.1 | BKD09_RS05940 | BKD09_RS05930 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.436 |
| def | APG07868.1 | BKD09_RS05940 | BKD09_RS05935 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.561 |
| def | fmt | BKD09_RS05940 | BKD09_RS05945 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.984 |
| def | map_2 | BKD09_RS05940 | BKD09_RS47020 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.697 |
| fmt | APG07868.1 | BKD09_RS05945 | BKD09_RS05935 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.422 |
| fmt | def | BKD09_RS05945 | BKD09_RS05940 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.984 |
| fmt | map_2 | BKD09_RS05945 | BKD09_RS47020 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.436 |
| map_2 | APG07868.1 | BKD09_RS47020 | BKD09_RS05935 | Type I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.423 |
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