APG10848.1 protein (Bradyrhizobium japonicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APG10848.1

Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)

Predicted Functional Partners:

APG13357.1

0.874

APG13358.1

0.845

APG14576.1

0.722

APG14015.1

0.715

APG10766.1

0.714

APG15148.1

0.711

APG08915.1

0.635

APG11662.1

0.620

APG09354.1

0.614

APG08782.1

0.605

Your Current Organism:

Bradyrhizobium japonicum

NCBI taxonomy Id: 375
Other names: ATCC 10324, B. japonicum, Bradyrhizobium sp. BC-P14, Bradyrhizobium sp. SEMIA 511, Bradyrhizobium sp. SEMIA 6154, Bradyrhizobium sp. mas14, Bradyrhizobium sp. mas32, Bradyrhizobium sp. mas33, Bradyrhizobium sp. mas35, Bradyrhizobium sp. mas36, Bradyrhizobium sp. mas37, Bradyrhizobium sp. mas38, Bradyrhizobium sp. mas39, Bradyrhizobium sp. mas4, Bradyrhizobium sp. mas43, Bradyrhizobium sp. mas44, Bradyrhizobium sp. mas45, Bradyrhizobium sp. mas48, Bradyrhizobium sp. mas5, CCUG 27876, CIP 106093, DSM 30131, DSMZ 30131, HAMBI 2314, IFO 14783, JCM 20679, LMG 6138, LMG:6138, NBRC 14783, NRRL B-4507, NRRL L-241, Rhizobacterium japonicum, Rhizobium japonicum, USDA 6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APG08782.1	APG10848.1	BKD09_RS10600	BKD09_RS21175	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
APG08782.1	APG13358.1	BKD09_RS10600	BKD09_RS33910	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
APG08915.1	APG10848.1	BKD09_RS11295	BKD09_RS21175	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APG08915.1	APG13358.1	BKD09_RS11295	BKD09_RS33910	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
APG09354.1	APG10848.1	BKD09_RS13500	BKD09_RS21175	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
APG09354.1	APG13358.1	BKD09_RS13500	BKD09_RS33910	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APG10766.1	APG10848.1	BKD09_RS20765	BKD09_RS21175	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
APG10766.1	APG13358.1	BKD09_RS20765	BKD09_RS33910	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
APG10848.1	APG08782.1	BKD09_RS21175	BKD09_RS10600	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
APG10848.1	APG08915.1	BKD09_RS21175	BKD09_RS11295	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APG10848.1	APG09354.1	BKD09_RS21175	BKD09_RS13500	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
APG10848.1	APG10766.1	BKD09_RS21175	BKD09_RS20765	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
APG10848.1	APG11662.1	BKD09_RS21175	BKD09_RS25335	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
APG10848.1	APG13357.1	BKD09_RS21175	BKD09_RS33905	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
APG10848.1	APG13358.1	BKD09_RS21175	BKD09_RS33910	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
APG10848.1	APG14015.1	BKD09_RS21175	BKD09_RS37250	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher.	0.715
APG10848.1	APG14576.1	BKD09_RS21175	BKD09_RS40100	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
APG10848.1	APG15148.1	BKD09_RS21175	BKD09_RS43280	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
APG11662.1	APG10848.1	BKD09_RS25335	BKD09_RS21175	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
APG11662.1	APG13358.1	BKD09_RS25335	BKD09_RS33910	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820

page 1 of 2

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About