Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APG07797.1 | APG12065.1 | BKD09_RS05570 | BKD09_RS27380 | 2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.918 |
| APG07797.1 | ndk | BKD09_RS05570 | BKD09_RS29565 | 2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.932 |
| APG07797.1 | pyrG | BKD09_RS05570 | BKD09_RS25490 | 2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.929 |
| APG12065.1 | APG07797.1 | BKD09_RS27380 | BKD09_RS05570 | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.918 |
| APG12065.1 | guaA | BKD09_RS27380 | BKD09_RS30275 | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.905 |
| APG12065.1 | ndk | BKD09_RS27380 | BKD09_RS29565 | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.900 |
| APG12065.1 | pyrG | BKD09_RS27380 | BKD09_RS25490 | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.912 |
| guaA | APG12065.1 | BKD09_RS30275 | BKD09_RS27380 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.905 |
| guaA | ndk | BKD09_RS30275 | BKD09_RS29565 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.579 |
| guaA | pyrG | BKD09_RS30275 | BKD09_RS25490 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.952 |
| guaA | rplC | BKD09_RS30275 | BKD09_RS22755 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.766 |
| guaA | rplD | BKD09_RS30275 | BKD09_RS22760 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.688 |
| guaA | rplE | BKD09_RS30275 | BKD09_RS22815 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.638 |
| guaA | rplF | BKD09_RS30275 | BKD09_RS22830 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.496 |
| guaA | rplM | BKD09_RS30275 | BKD09_RS24650 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.867 |
| guaA | rpsB | BKD09_RS30275 | BKD09_RS25250 | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. | 0.725 |
| ndk | APG07797.1 | BKD09_RS29565 | BKD09_RS05570 | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 2'-deoxycytidine 5'-triphosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.932 |
| ndk | APG12065.1 | BKD09_RS29565 | BKD09_RS27380 | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Nucleoside triphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| ndk | guaA | BKD09_RS29565 | BKD09_RS30275 | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.579 |
| ndk | pyrG | BKD09_RS29565 | BKD09_RS25490 | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.957 |
page 1 of 5