STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVH24_001470AA_TRNA_LIGASE_II domain-containing protein. (302 aa)    
Predicted Functional Partners:
DVH24_034439
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.878
DVH24_040880
S1 motif domain-containing protein.
   
 0.778
DVH24_004595
S1 motif domain-containing protein.
   
 0.778
DVH24_024374
S1 motif domain-containing protein.
   
 0.778
DVH24_030448
S1 motif domain-containing protein.
   
 0.778
DVH24_039278
Uncharacterized protein.
  
 0.768
DVH24_019227
Uncharacterized protein.
  
 0.768
DVH24_009493
Uncharacterized protein.
  
 0.768
DVH24_000035
Uncharacterized protein.
  
 0.768
DVH24_030513
Uncharacterized protein.
  
 0.768
Your Current Organism:
Malus domestica
NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple
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