STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVH24_003789Alpha-carbonic anhydrase domain-containing protein. (264 aa)    
Predicted Functional Partners:
DVH24_016417
Ribosomal_L18_c domain-containing protein.
    
 
 0.760
DVH24_019115
Brix domain-containing protein.
   
 
 0.661
DVH24_035001
Brix domain-containing protein.
   
 
 0.661
DVH24_029177
Uncharacterized protein.
   
 
 0.512
DVH24_017804
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.512
DVH24_015506
Ribosomal_L5 domain-containing protein.
    
 
 0.496
DVH24_017361
RING-CH-type domain-containing protein.
    
 
 0.496
DVH24_011395
RING-CH-type domain-containing protein.
    
 
 0.496
DVH24_036659
UPF0020 domain-containing protein.
   
    0.470
DVH24_025453
PUM-HD domain-containing protein.
   
    0.469
Your Current Organism:
Malus domestica
NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple
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