STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVH24_026038LOB domain-containing protein. (253 aa)    
Predicted Functional Partners:
DVH24_016785
Histone domain-containing protein.
    
 0.628
DVH24_029555
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 0.590
DVH24_041963
Histone H3; Belongs to the histone H3 family.
    
 0.579
DVH24_038135
Histone H3; Belongs to the histone H3 family.
    
 0.579
DVH24_038161
Histone domain-containing protein.
    
 0.579
DVH24_041441
HSA domain-containing protein.
   
 0.538
DVH24_041442
Uncharacterized protein.
   
 0.538
DVH24_025542
AP2/ERF domain-containing protein.
   
  
 0.462
DVH24_037570
Uncharacterized protein.
      
 0.456
DVH24_037569
NAC domain-containing protein.
      
 0.456
Your Current Organism:
Malus domestica
NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.