STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANK61978.1Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family. (338 aa)    
Predicted Functional Partners:
ANK61977.1
Proline reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.863
ANK61976.1
Proline reductase cluster protein PrdD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.854
ANK61979.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
ANK61972.1
D-proline reductase (dithiol) proprotein PrdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.788
ANK61974.1
Proline reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.715
ANK61973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.656
ANK61975.1
Proline reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
ANK61980.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.477
ANK62687.1
Sensory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.458
Your Current Organism:
Lactobacillus backii
NCBI taxonomy Id: 375175
Other names: DSM 18080, JCM 18665, L. backii, LMG 23555, LMG:23555, Lactobacillus backi, Lactobacillus backii Tohno et al. 2013, strain L1062
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