STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANK62251.1Carbonyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
ANK62254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.708
ANK61438.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.684
ANK62370.1
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.571
ANK62883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
ANK63091.1
NAD(P)-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
ANK62250.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
ANK61448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.481
ANK61437.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.445
ANK62252.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.440
ANK61765.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.412
Your Current Organism:
Lactobacillus backii
NCBI taxonomy Id: 375175
Other names: DSM 18080, JCM 18665, L. backii, LMG 23555, LMG:23555, Lactobacillus backi, Lactobacillus backii Tohno et al. 2013, strain L1062
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