STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANK63373.1HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
ANK63371.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
ANK63372.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.928
ANK63369.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
ANK63367.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.882
ANK63368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.879
ANK63361.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
AYR53_11600
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.803
ANK63358.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
ANK63359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.698
ANK63402.1
Phage antirepressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.657
Your Current Organism:
Lactobacillus backii
NCBI taxonomy Id: 375175
Other names: DSM 18080, JCM 18665, L. backii, LMG 23555, LMG:23555, Lactobacillus backi, Lactobacillus backii Tohno et al. 2013, strain L1062
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.