Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANK63420.1GTP pyrophosphokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)    
Predicted Functional Partners:
ANK61848.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
ANK63159.1
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
ANK61847.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
ANK62911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
ANK62048.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.627
ANK62856.1
RibT protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
ANK62642.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
ANK63419.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.599
ANK63416.1
RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
     0.581
ANK63591.1
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
Your Current Organism:
Lactobacillus backii
NCBI taxonomy Id: 375175
Other names: DSM 18080, JCM 18665, L. backii, LMG 23555, LMG:23555, Lactobacillus backi, Lactobacillus backii Tohno et al. 2013, strain L1062
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