Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acrB2Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1042 aa)    
Predicted Functional Partners:
acrA2
Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.996
acrA1
Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.941
acrA5
Acriflavin resistance lipoprotein A precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
 0.926
acrB1
Multidrug efflux pump, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 
0.920
tolC6
Outer membrane protein, tolC-like.
  
 0.918
acrB3
Acriflavin resistance transmembrane protein.
  
  
 
0.910
opmR
Outer membrane protein.
   
  0.829
mma_1066
Outer membrane efflux protein.
   
  0.829
tolC4
Outer membrane protein, tolC-like.
   
  0.829
tolC5
Outer membrane protein, tolC-like.
   
  0.829
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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